8DPZ: Local refinement of SARS-CoV-2 vaccine induced antibody DH1338 bound to SARS-CoV-2 HexaPro RBD Spike ectodomain

PDB ID: 8DPZDownload
MMDB ID: 233558
PDB Deposition Date: 2022/7/18
Updated in MMDB: 2023/08
Experimental Method:
electron microscopy
Resolution: 3.38  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 8DPZ: trimeric; determined by author
Molecular Components in 8DPZ
Label Count Molecule
Proteins (3 molecules)
1
Spike Protein S1
Molecule annotation
1
Dh1338 FAB Heavy Chain
Molecule annotation
1
Dh1338 FAB Light Chain
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
1
2
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303