8DND: Crystal structure of Bothrops pirajai Piratoxin-I (PrTX-I) and synthetic inhibitor Varespladib (LY315920)

PDB ID: 8DNDDownload
MMDB ID: 233557
PDB Deposition Date: 2022/7/11
Updated in MMDB: 2023/08
Experimental Method:
x-ray diffraction
Resolution: 2.018  Å
Source Organism:
Similar Structures:
Biological Unit for 8DND: dimeric; determined by author and by software (PISA)
Molecular Components in 8DND
Label Count Molecule
Proteins (2 molecules)
2
Basic Phospholipase A2 Homolog Piratoxin-1
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
3
({3-[amino(oxo)acetyl]-1-benzyl-2-ethyl-1H-indol-4-yl}oxy)acetic acid({3-[amino(oxo)acetyl]-1-benzyl-2-ethyl-1H-indol-4-yl}oxy)acetic acid
2
4
SULFATE IONSULFATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303