8D79: Crystal structure of a four-tetrad, parallel, and Na+ stabilized Tetrahymena thermophila telomeric G-quadruplex in complex with N-methyl mesoporphyrin IX

PDB ID: 8D79Download
MMDB ID: 232377
PDB Deposition Date: 2022/6/7
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 1.99  Å
Source Organism:
Biological Unit for 8D79: monomeric; determined by author
Molecular Components in 8D79
Label Count Molecule
Nucleotide(1 molecule)
1
DNA (5'-d(*tp*gp*gp*gp*gp*tp*tp*gp*gp*gp*gp*tp*tp*gp*gp*gp*gp*tp*tp*gp*gp*gp*gp*t)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
5
SODIUM IONSODIUM ION
2
1
N-METHYLMESOPORPHYRINN-METHYLMESOPORPHYRIN
3
2
(4S)-2-METHYL-2,4-PENTANEDIOL(4S)-2-METHYL-2,4-PENTANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303