8D56: One RBD-up state of SARS-CoV-2 BA.2 variant spike protein

PDB ID: 8D56Download
MMDB ID: 231131
PDB Deposition Date: 2022/6/4
Updated in MMDB: 2024/10
Experimental Method:
electron microscopy
Resolution: 3  Å
Source Organism:
Similar Structures:
Biological Unit for 8D56: trimeric; determined by author
Molecular Components in 8D56
Label Count Molecule
Proteins (3 molecules)
3
Spike Glycoprotein
Molecule annotation
Chemicals and Non-standard biopolymers (102 molecules)
1
81
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
18
alpha-D-mannopyranosealpha-D-mannopyranose
3
3
alpha-L-fucopyranosealpha-L-fucopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303