8D4E: Asymmetric unit of AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated wide(r) membrane tubes

PDB ID: 8D4EDownload
MMDB ID: 231643
PDB Deposition Date: 2022/6/1
Updated in MMDB: 2024/06
Experimental Method:
electron microscopy
Resolution: 9.2  Å
Source Organism:
Human immunodeficiency virus 1▼
Similar Structures:
Biological Unit for 8D4E: decameric; determined by author
Molecular Components in 8D4E
Label Count Molecule
Proteins (10 molecules)
3
Adp-ribosylation Factor 1
Molecule annotation
2
Protein NEF
Molecule annotation
1
HLA Class I Histocompatibility Antigen, a Alpha Chain
Molecule annotation
1
Ap-1 Complex Subunit Beta-1
Molecule annotation
1
Ap-1 Complex Subunit Gamma-1
Molecule annotation
1
Ap-1 Complex Subunit Mu-1
Molecule annotation
1
Ap-1 Complex Subunit Sigma-3
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
3
GUANOSINE-5'-TRIPHOSPHATEGUANOSINE-5'-TRIPHOSPHATE
2
3
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303