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8D37:
Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in replication conformer
PDB ID:
8D37
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MMDB ID:
230518
PDB Deposition Date:
2022/5/31
Updated in MMDB:
2024/12
Experimental Method:
electron microscopy
Resolution:
2.65 Å
Source Organism:
synthetic construct
▼
Taxonomy
Molecule
synthetic construct
P, T
Homo sapiens
A, B, C
Similar Structures:
VAST+
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Biological Unit for 8D37: pentameric; determined by author
Molecular Components in 8D37
Label
Count
Molecule
Proteins (3 molecules)
A
1
DNA Polymerase Subunit Gamma-1
B
C
2
DNA Polymerase Subunit Gamma-2, Mitochondrial
Nucleotides(2 molecules)
P
1
DNA (5'-d(p*ap*ap*ap*ap*cp*gp*ap*cp*gp*gp*cp*cp*ap*gp*tp*gp*cp*cp*ap*tp*ap*c)-3')
T
1
DNA (25-mer)
Chemicals and Non-standard biopolymers (2 molecules)
1
1
CALCIUM ION
2
1
2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303