8CMO: Cryo-EM structure of the Photosystem I - LHCI supercomplex from Coelastrella sp

PDB ID: 8CMODownload
MMDB ID: 243500
PDB Deposition Date: 2023/2/20
Updated in MMDB: 2024/03
Experimental Method:
electron microscopy
Resolution: 2.81  Å
Source Organism:
Similar Structures:
Biological Unit for 8CMO: 21-meric; determined by author
Molecular Components in 8CMO
Label Count Molecule
Proteins (21 molecules)
1
Photosystem I P700 Chlorophyll a Apoprotein A1 Psaa
Molecule annotation
1
Photosystem I P700 Chlorophyll a Apoprotein A2 Psab
Molecule annotation
1
Photosystem I Subunit VII Psac
Molecule annotation
1
Photosystem I Reaction Center Subunit II Psad
Molecule annotation
1
Photosystem I Reaction Center Subunit IV Psae
Molecule annotation
1
Photosystem I Reaction Center Subunit III Psaf
Molecule annotation
1
Photosystem I Reaction Center Subunit V Psag
Molecule annotation
1
Photosystem I Reaction Center Subunit Viii Psai
Molecule annotation
1
Photosystem I Subunit IX Psaj
Molecule annotation
1
Photosystem I Reaction Center Subunit X Psak
Molecule annotation
1
Photosystem I Reaction Centre Subunit XI Psal
Molecule annotation
2
Light-harvesting Protein of Photosystem I Lhca1
Molecule annotation
1
Light-harvesting Protein of Photosystem I Lhca3
Molecule annotation
1
Light-harvesting Protein of Photosystem I Lhca7
Molecule annotation
1
Light-harvesting Protein of Photosystem I Lhca8
Molecule annotation
1
Light-harvesting Protein of Photosystem I Lhca4
Molecule annotation
1
Light-harvesting Protein of Photosystem I Lhca5
Molecule annotation
1
Light-harvesting Protein of Photosystem I Lhca6
Molecule annotation
1
Light-harvesting Protein of Photosystem I Lhca9
Molecule annotation
1
Light-harvesting Protein of Photosystem I Lhca2 Partial
Molecule annotation
Chemicals and Non-standard biopolymers (332 molecules)
1
1
CHLOROPHYLL A ISOMERCHLOROPHYLL A ISOMER
2
213
CHLOROPHYLL ACHLOROPHYLL A
3
2
PHYLLOQUINONEPHYLLOQUINONE
4
30
BETA-CAROTENEBETA-CAROTENE
5
15
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
6
2
(2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate(2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate
7
1
DIACYL GLYCEROLDIACYL GLYCEROL
8
1
OCTANOIC ACID (CAPRYLIC ACID)OCTANOIC ACID (CAPRYLIC ACID)
9
3
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
10
1
CALCIUM IONCALCIUM ION
11
3
DIGALACTOSYL DIACYL GLYCEROL (DGDG)DIGALACTOSYL DIACYL GLYCEROL (DGDG)
12
1
(3R)-beta,beta-caroten-3-ol(3R)-beta,beta-caroten-3-ol
13
5
DODECYL-BETA-D-MALTOSIDEDODECYL-BETA-D-MALTOSIDE
14
2
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
15
1
PhosphatidylinositolPhosphatidylinositol
16
2
(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol
17
1
LAURIC ACIDLAURIC ACID
18
18
(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
19
22
CHLOROPHYLL BCHLOROPHYLL B
20
1
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
21
4
1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
22
2
SPHINGOSINESPHINGOSINE
23
1
(2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate(2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303