8CMM: Re-pairing DNA - binding of a ruthenium phi complex to a double mismatch

PDB ID: 8CMMDownload
MMDB ID: 243499
PDB Deposition Date: 2023/2/20
Updated in MMDB: 2025/12
Experimental Method:
x-ray diffraction
Resolution: 0.9  Å
Source Organism:
Biological Unit for 8CMM: dimeric; determined by author
Molecular Components in 8CMM
Label Count Molecule
Nucleotides(2 molecules)
2
DNA (5'-d(*cp*gp*cp*tp*ap*tp*ap*ap*tp*gp*cp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (10 molecules)
1
1
ruthenium polypyridyl complex (delta enantiomer)ruthenium polypyridyl complex (delta enantiomer)
2
3
ruthenium polypyridyl complex (lambda enantiomer)ruthenium polypyridyl complex (lambda enantiomer)
3
4
POTASSIUM IONPOTASSIUM ION
4
2
LITHIUM IONLITHIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303