8CMH: Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 Omicron (BA.1) Spike peptide S486-505

PDB ID: 8CMHDownload
MMDB ID: 233240
PDB Deposition Date: 2023/2/19
Updated in MMDB: 2023/08
Experimental Method:
x-ray diffraction
Resolution: 1.64  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 8CMH: trimeric; determined by author and by software (PISA)
Molecular Components in 8CMH
Label Count Molecule
Proteins (3 molecules)
1
HLA Class II Histocompatibility Antigen, DR Alpha Chain
Molecule annotation
1
Human Leukocyte Antigen DR Beta Chain Allotype DR1 (Drb1*0101)
Molecule annotation
1
Spike Protein S2'
Molecule annotation
Chemicals and Non-standard biopolymers (32 molecules)
1
30
1,2-ETHANEDIOL1,2-ETHANEDIOL
2
1
SULFATE IONSULFATE ION
3
1
2-AMINO-ETHANETHIOL2-AMINO-ETHANETHIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303