8CAI: Streptomycin and Hygromycin B bound to the 30S body

PDB ID: 8CAIDownload
MMDB ID: 233217
PDB Deposition Date: 2023/1/24
Updated in MMDB: 2023/11
Experimental Method:
electron microscopy
Resolution: 2.08  Å
Source Organism:
Similar Structures:
Biological Unit for 8CAI: 15-meric; determined by author
Molecular Components in 8CAI
Label Count Molecule
Proteins (14 molecules)
1
30S Ribosomal Protein S2
Molecule annotation
1
Small Ribosomal Subunit Protein US3
(Gene symbol: rpsC)
Molecule annotation
1
Small Ribosomal Subunit Protein US4
Molecule annotation
1
Small Ribosomal Subunit Protein US5
Molecule annotation
1
Small Ribosomal Subunit Protein Bs6, Non-modified Isoform
Molecule annotation
1
Small Ribosomal Subunit Protein US8
Molecule annotation
1
Small Ribosomal Subunit Protein Us11
Molecule annotation
1
Small Ribosomal Subunit Protein Us12
Molecule annotation
1
Small Ribosomal Subunit Protein Us15
Molecule annotation
1
30S Ribosomal Protein S16
Molecule annotation
1
Small Ribosomal Subunit Protein Us17
Molecule annotation
1
Small Ribosomal Subunit Protein Bs18
(Gene symbol: rpsR)
Molecule annotation
1
30S Ribosomal Protein S20
Molecule annotation
1
Small Ribosomal Subunit Protein Bs21
(Gene symbol: rpsU)
Molecule annotation
Nucleotide(1 molecule)
1
16S rRNA
Molecule annotation
Chemicals and Non-standard biopolymers (89 molecules)
1
29
POTASSIUM IONPOTASSIUM ION
2
3
HYGROMYCIN B VARIANTHYGROMYCIN B VARIANT
3
1
[(2~{S},3~{S},4~{S},5~{R},6~{S})-2-[(2~{R},3~{R},4~{R},5~{S})-2-[(1~{R},2~{S},3~{R},4~{R},5~{S},6~{R})-2,4-bis[[azaniumylidene(azanyl)methyl]amino]-3,5,6-tris(oxidanyl)cyclohexyl]oxy-4-[bis(oxidanyl)methyl]-5-methyl-4-oxidanyl-oxolan-3-yl]oxy-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]-methyl-azanium[(2~{S},3~{S},4~{S},5~{R},6~{S})-2-[(2~{R},3~{R},4~{R},5~{S})-2-[(1~{R},2~{S},3~{R},4~{R},5~{S},6~{R})-2,4-bis[[azaniumylidene(azanyl)methyl]amino]-3,5,6-tris(oxidanyl)cyclohexyl]oxy-4-[bis(oxidanyl)methyl]-5-methyl-4-oxidanyl-oxolan-3-yl]oxy-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]-methyl-azanium
4
1
SPECTINOMYCINSPECTINOMYCIN
5
55
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303