8CAH: Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

PDB ID: 8CAHDownload
MMDB ID: 230493
PDB Deposition Date: 2023/1/24
Updated in MMDB: 2025/12
Experimental Method:
electron microscopy
Resolution: 3  Å
Source Organism:
Similar Structures:
Biological Unit for 8CAH: 48-meric; determined by author
Molecular Components in 8CAH
Label Count Molecule
Proteins (47 molecules)
1
Eukaryotic Translation Initiation Factor 3 Subunit I
Molecule annotation
1
Eukaryotic Translation Initiation Factor 3 Subunit G
Molecule annotation
1
Eukaryotic Translation Initiation Factor 3 Subunit a
(Gene symbol: RPG1)
Molecule annotation
1
Eukaryotic Translation Initiation Factor 3 Subunit B
Molecule annotation
1
Eukaryotic Translation Initiation Factor 3 Subunit C
Molecule annotation
1
Eukaryotic Translation Initiation Factor 4C
Molecule annotation
1
Sui1 Isoform 1
Molecule annotation
1
RNA Recognition Motif (Unknown)
Molecule annotation
1
40S Ribosomal Protein S0-a
(Gene symbol: RPS0A)
Molecule annotation
1
40S Ribosomal Protein S1-a
(Gene symbol: RPS1A)
Molecule annotation
1
40S Ribosomal Protein S2
(Gene symbol: RPS2)
Molecule annotation
1
40S Ribosomal Protein S4-b
(Gene symbol: RPS4A)
Molecule annotation
1
40S Ribosomal Protein S6-b
(Gene symbol: RPS6B)
Molecule annotation
1
40S Ribosomal Protein S8-a
(Gene symbol: RPS8A)
Molecule annotation
1
40S Ribosomal Protein S9-a
(Gene symbol: RPS9A)
Molecule annotation
1
40S Ribosomal Protein S11-a
(Gene symbol: RPS11A)
Molecule annotation
1
40S Ribosomal Protein S13
(Gene symbol: RPS13)
Molecule annotation
1
40S Ribosomal Protein S14-a
(Gene symbol: RPS14A)
Molecule annotation
1
40S Ribosomal Protein S21-a
(Gene symbol: RPS21A)
Molecule annotation
1
40S Ribosomal Protein S22-a
(Gene symbol: RPS22A)
Molecule annotation
1
40S Ribosomal Protein S23-a
(Gene symbol: RPS23A)
Molecule annotation
1
40S Ribosomal Protein S24-a
(Gene symbol: RPS24B)
Molecule annotation
1
40S Ribosomal Protein S26-a
(Gene symbol: RPS26A)
Molecule annotation
1
40S Ribosomal Protein S27-a
(Gene symbol: RPS27A)
Molecule annotation
1
40S Ribosomal Protein S30-a
(Gene symbol: RPS30A)
Molecule annotation
1
Rps15 Isoform 1
(Gene symbol: RPS15)
Molecule annotation
1
40S Ribosomal Protein S3
(Gene symbol: RPS3)
Molecule annotation
1
40S Ribosomal Protein S5
(Gene symbol: RPS5)
Molecule annotation
1
40S Ribosomal Protein S10-a
(Gene symbol: RPS10A)
Molecule annotation
1
40S Ribosomal Protein S12
(Gene symbol: RPS12)
Molecule annotation
1
40S Ribosomal Protein S16-a
(Gene symbol: RPS16B)
Molecule annotation
1
40S Ribosomal Protein S17-a
(Gene symbol: RPS17A)
Molecule annotation
1
40S Ribosomal Protein S18-a
(Gene symbol: RPS18A)
Molecule annotation
1
40S Ribosomal Protein S19-a
(Gene symbol: RPS19A)
Molecule annotation
1
40S Ribosomal Protein S20
(Gene symbol: RPS20)
Molecule annotation
1
40S Ribosomal Protein S25-a
(Gene symbol: RPS25A)
Molecule annotation
1
Rps29a Isoform 1
(Gene symbol: RPS29A)
Molecule annotation
1
40S Ribosomal Protein S31
(Gene symbol: RPS31)
Molecule annotation
1
Guanine Nucleotide-binding Protein Subunit Beta-like Protein
(Gene symbol: ASC1)
Molecule annotation
1
40S Ribosomal Protein S28-a
(Gene symbol: RPS28A)
Molecule annotation
2
Eukaryotic Translation Initiation Factor 3 Subunit J
Molecule annotation
1
Rli1 Isoform 1
Molecule annotation
1
60S Ribosomal Protein L40-a
(Gene symbol: RPL40B)
Molecule annotation
1
60S Ribosomal Protein L41-a
(Gene symbol: RPL41A)
Molecule annotation
1
OTU Domain-containing Protein 2
(Gene symbol: OTU2)
Molecule annotation
1
40S Ribosomal Protein S7-a
(Gene symbol: RPS7A)
Molecule annotation
Nucleotide(1 molecule)
1
18S Ribosomal RNA
Molecule annotation
Chemicals and Non-standard biopolymers (85 molecules)
80
2
2
1
* Click molecule labels to explore molecular sequence information.

Citing MMDB