8C82: Cryo-EM structure of the yeast SPT-Orm1-Dimer complex

PDB ID: 8C82Download
MMDB ID: 236537
PDB Deposition Date: 2023/1/18
Updated in MMDB: 2023/10
Experimental Method:
electron microscopy
Resolution: 3.4  Å
Source Organism:
Similar Structures:
Biological Unit for 8C82: octameric; determined by author
Molecular Components in 8C82
Label Count Molecule
Proteins (8 molecules)
2
Protein Orm1
(Gene symbol: ORM1)
Molecule annotation
2
Serine Palmitoyltransferase 1
(Gene symbol: LCB1)
Molecule annotation
2
Serine Palmitoyltransferase 2
(Gene symbol: LCB2)
Molecule annotation
2
Serine Palmitoyltransferase-regulating Protein Tsc3
(Gene symbol: TSC3)
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
2
N-[(2S,3S,4R)-1,3,4-trihydroxyoctadecan-2-yl]hexacosanamideN-[(2S,3S,4R)-1,3,4-trihydroxyoctadecan-2-yl]hexacosanamide
2
2
PYRIDOXAL-5'-PHOSPHATEPYRIDOXAL-5'-PHOSPHATE
3
2
2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303