8C56: CpG specific M.MpeI methyltransferase crystallized in the presence of 2'-deoxy-5-methylzebularine (5mZ) and 5-methylcytosine containing dsDNA

PDB ID: 8C56Download
MMDB ID: 241232
PDB Deposition Date: 2023/1/6
Updated in MMDB: 2024/09
Experimental Method:
x-ray diffraction
Resolution: 2.4  Å
Source Organism:
Malacoplasma penetrans HF-2▼
Similar Structures:
Biological Unit for 8C56: trimeric; determined by author
Molecular Components in 8C56
Label Count Molecule
Protein (1 molecule)
1
Cytosine-specific Methyltransferase
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*cp*cp*ap*cp*ap*tp*gp*(5py)p*gp*cp*tp*gp*ap*a)-3')
Molecule annotation
1
DNA (5'-d(*gp*tp*tp*cp*ap*gp*(5cm)p*gp*cp*ap*tp*gp*tp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
1
S-ADENOSYL-L-HOMOCYSTEINES-ADENOSYL-L-HOMOCYSTEINE
2
1
GLYCEROLGLYCEROL
3
1
SODIUM IONSODIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303