NCBI
National Center for
Biotechnology Information
Search
8BSE:
CRYSTAL STRUCTURE OF SARS-COV-2 RECEPTOR BINDING DOMAIN (RBD) in complex with 1D1 Fab
PDB ID:
8BSE
Download
MMDB ID:
230233
PDB Deposition Date:
2022/11/25
Updated in MMDB:
2024/10
Experimental Method:
x-ray diffraction
Resolution:
1.9 Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2
▼
Taxonomy
Molecule
Severe acute respiratory syndrome coronavirus 2
A
Homo sapiens
H, L
Similar Structures:
VAST+
Download sequence data
Biological Unit for 8BSE: trimeric; determined by author and by software (PISA)
Molecular Components in 8BSE
Label
Count
Molecule
Proteins (3 molecules)
A
1
Spike Glycoprotein
H
1
1D1 FAB Heavy Chain
L
1
1D1 FAB Light Chain
Chemicals and Non-standard biopolymers (7 molecules)
1
1
2-acetamido-2-deoxy-beta-D-glucopyranose
2
5
GLYCEROL
3
1
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303