8BK3: Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with diepoxide ketone 1

PDB ID: 8BK3Download
MMDB ID: 238693
PDB Deposition Date: 2022/11/8
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2.15  Å
Source Organism:
Similar Structures:
Biological Unit for 8BK3: dimeric; determined by author
Molecular Components in 8BK3
Label Count Molecule
Proteins (2 molecules)
2
L,d-transpeptidase 2
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
1
1
1-[(2~{S},3~{R})-3-phenyloxiran-2-yl]ethanone1-[(2~{S},3~{R})-3-phenyloxiran-2-yl]ethanone
2
4
NITRATE IONNITRATE ION
3
1
GLYCEROLGLYCEROL
4
1
1,2-ETHANEDIOL1,2-ETHANEDIOL
5
2
DIMETHYL SULFOXIDEDIMETHYL SULFOXIDE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303