8BGW: CryoEM structure of quinol-dependent Nitric Oxide Reductase (qNOR) from Alcaligenes xylosoxidans at 2.2 A resolution

PDB ID: 8BGWDownload
MMDB ID: 234163
PDB Deposition Date: 2022/10/28
Updated in MMDB: 2023/08
Experimental Method:
electron microscopy
Resolution: 2.2  Å
Source Organism:
Similar Structures:
Biological Unit for 8BGW: dimeric; determined by author
Molecular Components in 8BGW
Label Count Molecule
Proteins (2 molecules)
2
Nitric Oxide Reductase Subunit B
Molecule annotation
Chemicals and Non-standard biopolymers (25 molecules)
1
4
PROTOPORPHYRIN IX CONTAINING FEPROTOPORPHYRIN IX CONTAINING FE
2
2
FE (III) IONFE (III) ION
3
2
CALCIUM IONCALCIUM ION
4
2
decyl 4-O-alpha-D-glucopyranosyl-1-thio-beta-D-glucopyranosidedecyl 4-O-alpha-D-glucopyranosyl-1-thio-beta-D-glucopyranoside
5
2
UBIQUINONE-1UBIQUINONE-1
6
13
(1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE(1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303