8BEV: Cryo-EM structure of SARS-CoV-2 spike (HexaPro variant) in complex with nanobody W25 (map 3, focus refinement on RBD, W25 and adjacent NTD)

PDB ID: 8BEVDownload
MMDB ID: 227550
PDB Deposition Date: 2022/10/21
Updated in MMDB: 2023/03
Experimental Method:
electron microscopy
Resolution: 5.92  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 8BEV: trimeric; determined by author
Molecular Components in 8BEV
Label Count Molecule
Proteins (3 molecules)
2
Spike Glycoprotein
Molecule annotation
1
Immunoglobulin MU Heavy Chain
Molecule annotation
Chemicals and Non-standard biopolymers (12 molecules)
1
9
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
3
beta-D-mannopyranosebeta-D-mannopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303