8BCV: Photosystem I assembly intermediate of Avena sativa

PDB ID: 8BCVDownload
MMDB ID: 237347
PDB Deposition Date: 2022/10/17
Updated in MMDB: 2023/11
Experimental Method:
electron microscopy
Resolution: 2.2  Å
Source Organism:
Similar Structures:
Biological Unit for 8BCV: hexadecameric; determined by author
Molecular Components in 8BCV
Label Count Molecule
Proteins (16 molecules)
1
Photosystem I P700 Chlorophyll a Apoprotein A1
Molecule annotation
1
Photosystem I P700 Chlorophyll a Apoprotein A2
Molecule annotation
1
Photosystem I Iron-sulfur Center
Molecule annotation
1
Photosystem I Reaction Center Subunit II
Molecule annotation
1
Photosystem I Reaction Center Subunit IV
Molecule annotation
1
Photosystem I Reaction Center Subunit VI
Molecule annotation
1
Photosystem I Reaction Center Subunit Viii
Molecule annotation
1
Photosystem I Reaction Center Subunit XI
Molecule annotation
1
Photosystem I Reaction Center Subunit III
Molecule annotation
1
Photosystem I Reaction Center Subunit V
Molecule annotation
1
Photosystem I Reaction Center Subunit IX
Molecule annotation
1
Photosystem I Reaction Center Subunit X
Molecule annotation
1
Chlorophyll A-B Binding Protein 1, Chloroplastic
Molecule annotation
1
Chlorophyll A-B Binding Protein 2, Chloroplastic
Molecule annotation
1
Chlorophyll A-B Binding Protein 3, Chloroplastic
Molecule annotation
1
Chlorophyll A-B Binding Protein 4, Chloroplastic
Molecule annotation
Chemicals and Non-standard biopolymers (224 molecules)
1
2
CHLOROPHYLL A ISOMERCHLOROPHYLL A ISOMER
2
140
CHLOROPHYLL ACHLOROPHYLL A
3
2
PHYLLOQUINONEPHYLLOQUINONE
4
6
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
5
23
BETA-CAROTENEBETA-CAROTENE
6
3
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
7
4
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
8
18
DODECYL-ALPHA-D-MALTOSIDEDODECYL-ALPHA-D-MALTOSIDE
9
3
DIGALACTOSYL DIACYL GLYCEROL (DGDG)DIGALACTOSYL DIACYL GLYCEROL (DGDG)
10
7
(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
11
12
CHLOROPHYLL BCHLOROPHYLL B
12
2
(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
13
1
(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol
14
1
AntheraxanthinAntheraxanthin
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303