8AM5: RCII/PSI complex, class 3

PDB ID: 8AM5Download
MMDB ID: 234149
PDB Deposition Date: 2022/8/2
Updated in MMDB: 2024/10
Experimental Method:
electron microscopy
Resolution: 3.1  Å
Source Organism:
Similar Structures:
Biological Unit for 8AM5: heptadecameric; determined by author and by software (PISA)
Molecular Components in 8AM5
Label Count Molecule
Proteins (17 molecules)
1
Photosystem II Protein D1 2
Molecule annotation
1
Photosystem II D2 Protein
Molecule annotation
1
Cytochrome B559 Subunit Alpha
Molecule annotation
1
Cytochrome B559 Subunit Beta
Molecule annotation
1
Photosystem II Reaction Center Protein I
Molecule annotation
1
Photosystem II Assembly Lipoprotein Ycf48
Molecule annotation
1
Photosystem I P700 Chlorophyll a Apoprotein A1
Molecule annotation
1
Photosystem I P700 Chlorophyll a Apoprotein A2
Molecule annotation
1
Photosystem I Iron-sulfur Center
Molecule annotation
1
Photosystem I Reaction Center Subunit II
Molecule annotation
1
Photosystem I Reaction Center Subunit IV
Molecule annotation
1
Photosystem I Reaction Center Subunit III
Molecule annotation
1
Photosystem I Reaction Center Subunit Viii
Molecule annotation
1
Photosystem I Reaction Center Subunit IX
Molecule annotation
1
Photosystem I Reaction Center Subunit Psak 1
Molecule annotation
1
Photosystem I Reaction Center Subunit XI
Molecule annotation
1
Photosystem I Reaction Center Subunit XII
Molecule annotation
Chemicals and Non-standard biopolymers (146 molecules)
1
1
FE (II) IONFE (II) ION
2
101
CHLOROPHYLL ACHLOROPHYLL A
3
2
PHEOPHYTIN APHEOPHYTIN A
4
19
BETA-CAROTENEBETA-CAROTENE
5
1
PROTOPORPHYRIN IX CONTAINING FEPROTOPORPHYRIN IX CONTAINING FE
6
1
CHLOROPHYLL A ISOMERCHLOROPHYLL A ISOMER
7
2
PHYLLOQUINONEPHYLLOQUINONE
8
3
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
9
5
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
10
4
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
11
1
beta,beta-carotene-4,4'-dionebeta,beta-carotene-4,4'-dione
12
2
beta,beta-caroten-4-onebeta,beta-caroten-4-one
13
1
(3'R)-3'-hydroxy-beta,beta-caroten-4-one(3'R)-3'-hydroxy-beta,beta-caroten-4-one
14
2
(1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol(1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol
15
1
DODECYL-BETA-D-MALTOSIDEDODECYL-BETA-D-MALTOSIDE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303