7YP8: Neisseria gonorrhoeae Leucyl-tRNA Synthetase in Complex with Leucyl-sulfamoyl 3-deazaadenosine

PDB ID: 7YP8Download
MMDB ID: 242192
PDB Deposition Date: 2022/8/2
Updated in MMDB: 2024/02
Experimental Method:
x-ray diffraction
Resolution: 2.1  Å
Source Organism:
Similar Structures:
Biological Unit for 7YP8: monomeric; determined by author and by software (PISA)
Molecular Components in 7YP8
Label Count Molecule
Protein (1 molecule)
1
Leucine--trna Ligase
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
1
1,2-ETHANEDIOL1,2-ETHANEDIOL
2
1
[(2R,3S,4R,5R)-5-(4-azanylimidazo[4,5-c]pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl N-[(2S)-2-azanyl-4-methyl-pentanoyl]sulfamate[(2R,3S,4R,5R)-5-(4-azanylimidazo[4,5-c]pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl N-[(2S)-2-azanyl-4-methyl-pentanoyl]sulfamate
3
1
ZINC IONZINC ION
4
1
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303