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7YGD:
Cryo-EM structure of Tetrahymena ribozyme conformation 6 undergoing the second-step self-splicing
PDB ID:
7YGD
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MMDB ID:
228361
PDB Deposition Date:
2022/7/11
Updated in MMDB:
2024/07
Experimental Method:
electron microscopy
Resolution:
3.41 Å
Source Organism:
Tetrahymena
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Biological Unit for 7YGD: trimeric; determined by author
Molecular Components in 7YGD
Label
Count
Molecule
Nucleotides(3 molecules)
A
1
RNA (5'-r(*up*cp*g)-3')
B
1
RNA (5'-r(*cp*c)-3')
N
1
RNA (384-mer)
Chemicals and Non-standard biopolymers (6 molecules)
1
6
MAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303