7YD7: TR-SFX MmCPDII-DNA complex: 1 ns snapshot. Includes 1 ns, dark, and extrapolated structure factors

PDB ID: 7YD7Download
MMDB ID: 238676
PDB Deposition Date: 2022/7/4
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 2.25  Å
Source Organism:
Methanosarcina mazei Go1▼
Similar Structures:
Biological Unit for 7YD7: trimeric; determined by author and by software (PISA)
Molecular Components in 7YD7
Label Count Molecule
Protein (1 molecule)
1
Deoxyribodipyrimidine Photo-lyase
Molecule annotation
Nucleotides(2 molecules)
1
CPD Photolesion Containing DNA
Molecule annotation
1
Complementary Oligonucleotide to the CPD Containing DNA
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
1
1
SULFATE IONSULFATE ION
2
1
FLAVIN-ADENINE DINUCLEOTIDEFLAVIN-ADENINE DINUCLEOTIDE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303