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7XVM:
Crystal Structure of Nucleosome-H5 Linker Histone Assembly (sticky-169a DNA fragment)
PDB ID:
7XVM
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MMDB ID:
230395
PDB Deposition Date:
2022/5/24
Updated in MMDB:
2023/12
Experimental Method:
x-ray diffraction
Resolution:
2.84 Å
Source Organism:
synthetic construct
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Taxonomy
Molecule
synthetic construct
I, J, S, T
Homo sapiens
A, B, C, D, E, F, G, H, K, L, M, N, O, P, Q, R
Gallus gallus
U, V
Similar Structures:
VAST+
Download sequence data
Biological Unit for 7XVM: 22-meric; determined by author
Molecular Components in 7XVM
Label
Count
Molecule
Proteins (18 molecules)
A
E
K
O
4
Histone H3.1
B
F
L
P
4
Histone H4
C
G
M
Q
4
Histone H2A Type 1-b/e
D
H
N
R
4
Histone H2B Type 1-J
U
V
2
Histone H5
Nucleotides(4 molecules)
I
S
2
DNA (169-mer)
J
T
2
DNA (169-mer)
Chemicals and Non-standard biopolymers (23 molecules)
1
18
CALCIUM ION
2
3
CHLORIDE ION
3
2
POTASSIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303