7PI0: Unstacked compact Dunaliella PSII

PDB ID: 7PI0Download
MMDB ID: 251993
PDB Deposition Date: 2021/8/19
Updated in MMDB: 2024/09
Experimental Method:
electron microscopy
Resolution: 2.43  Å
Source Organism:
Similar Structures:
Biological Unit for 7PI0: 50-meric; determined by author and by software
Molecular Components in 7PI0
Label Count Molecule
Proteins (50 molecules)
2
Photosystem II Protein D1
Molecule annotation
2
Photosystem II Cp47 Reaction Center Protein
Molecule annotation
2
Photosystem II Reaction Center Protein Ycf12
Molecule annotation
2
Photosystem II Cp43 Reaction Center Protein
Molecule annotation
2
Photosystem II D2 Protein
Molecule annotation
2
Cytochrome B559 Subunit Alpha
Molecule annotation
2
Cytochrome B559 Subunit Beta
Molecule annotation
2
Photosystem II Reaction Center Protein H
Molecule annotation
2
Photosystem II Reaction Center Protein I
Molecule annotation
2
Photosystem II Reaction Center Protein J
Molecule annotation
2
Photosystem II Reaction Center Protein K
Molecule annotation
2
Photosystem II Reaction Center Protein L
Molecule annotation
2
Photosystem II Reaction Center Protein M
Molecule annotation
2
Oxygen-evolving Enhancer Protein 1, Chloroplastic
Molecule annotation
2
Oxygen-evolving Enhancer Protein 2, Chloroplastic
Molecule annotation
2
Photosystem II Reaction Center Protein T
Molecule annotation
2
Psii 6.1 KDA Protein
Molecule annotation
2
Hypothetical Protein
Molecule annotation
2
Photosystem II Reaction Center Protein Z
Molecule annotation
2
Chlorophyll A-B Binding Protein of Lhcii Type 3, Chloroplastic
Molecule annotation
2
Chlorophyll A-B Binding Protein of Lhcii Type 2, Chloroplastic
Molecule annotation
2
Chlorophyll A-B Binding Protein, Chloroplastic, Cp29
Molecule annotation
2
Chlorophyll A-B Binding Protein, Chloroplastic, Cp26
Molecule annotation
2
Chlorophyll A-B Binding Protein of Lhcii Type 1, Chloroplastic
Molecule annotation
2
Photosystem II Extrinsic Protein U
Molecule annotation
Chemicals and Non-standard biopolymers (354 molecules)
1
2
CA-MN4-O5 CLUSTERCA-MN4-O5 CLUSTER
2
2
FE (II) IONFE (II) ION
3
4
CHLORIDE IONCHLORIDE ION
4
156
CHLOROPHYLL ACHLOROPHYLL A
5
4
PHEOPHYTIN APHEOPHYTIN A
6
16
BETA-CAROTENEBETA-CAROTENE
7
2
SODIUM IONSODIUM ION
8
6
1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
9
2
(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol
10
15
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
11
8
DIGALACTOSYL DIACYL GLYCEROL (DGDG)DIGALACTOSYL DIACYL GLYCEROL (DGDG)
12
19
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
13
2
DODECYL-BETA-D-MALTOSIDEDODECYL-BETA-D-MALTOSIDE
14
10
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
15
4
SPHINGOSINESPHINGOSINE
16
6
DIACYL GLYCEROLDIACYL GLYCEROL
17
2
BICARBONATE IONBICARBONATE ION
18
2
2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE
19
2
PROTOPORPHYRIN IX CONTAINING FEPROTOPORPHYRIN IX CONTAINING FE
20
2
(3R)-beta,beta-caroten-3-ol(3R)-beta,beta-caroten-3-ol
21
46
CHLOROPHYLL BCHLOROPHYLL B
22
18
(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
23
10
(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL
24
8
(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
25
4
PHOSPHATIDYLETHANOLAMINEPHOSPHATIDYLETHANOLAMINE
26
2
(2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate(2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303