7ODF: Structure of the mini-RNA-guided endonuclease CRISPR-Cas_phi3

PDB ID: 7ODFDownload
MMDB ID: 204799
PDB Deposition Date: 2021/4/29
Updated in MMDB: 2021/08
Experimental Method:
electron microscopy
Resolution: 2.66  Å
Source Organism:
Phage #D▼
Similar Structures:
Biological Unit for 7ODF: pentameric; determined by author
Molecular Components in 7ODF
Label Count Molecule
Protein (1 molecule)
1
Cas_phi3
Molecule annotation
Nucleotides(4 molecules)
1
DNA (5'-d(p*gp*tp*ap*tp*cp*cp*cp*ap*tp*tp*ap*cp*cp*ap*gp*cp*tp*gp*ap*ap*tp*tp*ap*c)-3')
Molecule annotation
1
DNA (5'-d(p*gp*tp*ap*ap*tp*tp*cp*ap*g)-3')
Molecule annotation
1
DNA (5'-d(p*gp*g)-3')
Molecule annotation
1
RNA (43-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
1
1
NICKEL (II) IONNICKEL (II) ION
2
1
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303