7NX8: Crystal structure of the K417T mutant receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-222 and EY6A Fabs

PDB ID: 7NX8Download
MMDB ID: 200806
PDB Deposition Date: 2021
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 1.95  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 7NX8: pentameric; determined by author and by software (PISA)
Molecular Components in 7NX8
Label Count Molecule
Proteins (5 molecules)
1
Ey6a FAB Heavy Chain
Molecule annotation
1
Ey6a FAB Light Chain
Molecule annotation
1
Spike Protein S1
Molecule annotation
1
Covox-222 FAB Heavy Chain
Molecule annotation
1
Covox-222 FAB Light Chain
Molecule annotation
Chemicals and Non-standard biopolymers (28 molecules)
1
1
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
3
GLYCEROLGLYCEROL
3
4
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
4
12
SULFATE IONSULFATE ION
5
1
CITRIC ACIDCITRIC ACID
6
7
CHLORIDE IONCHLORIDE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303