7NKT: RBD domain of SARS-CoV2 in complex with neutralizing nanobody NM1226

PDB ID: 7NKTDownload
MMDB ID: 201772
PDB Deposition Date: 2021/2/18
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 2.3  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 7NKT: dimeric; determined by author and by software (PISA)
Molecular Components in 7NKT
Label Count Molecule
Proteins (2 molecules)
1
Spike Protein S1
Molecule annotation
1
Neutralizing Nanobody Nm1226
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
1
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
PHOSPHATE IONPHOSPHATE ION
3
3
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303