7NDW: ThyX-FADH2 soaked with 20 mM Formaldehyde

PDB ID: 7NDWDownload
MMDB ID: 204774
PDB Deposition Date: 2021/2/2
Updated in MMDB: 2021/10
Experimental Method:
x-ray diffraction
Resolution: 2  Å
Source Organism:
Similar Structures:
Biological Unit for 7NDW: tetrameric; determined by author and by software (PISA)
Molecular Components in 7NDW
Label Count Molecule
Proteins (4 molecules)
4
Flavin-dependent Thymidylate Synthase
Molecule annotation
Chemicals and Non-standard biopolymers (15 molecules)
1
2
[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4S)-5-[5-methanoyl-7,8-dimethyl-2,4-bis(oxidanylidene)-1H-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4S)-5-[5-methanoyl-7,8-dimethyl-2,4-bis(oxidanylidene)-1H-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate
2
7
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
3
3
PHOSPHATE IONPHOSPHATE ION
4
2
DIHYDROFLAVINE-ADENINE DINUCLEOTIDEDIHYDROFLAVINE-ADENINE DINUCLEOTIDE
5
1
TETRAETHYLENE GLYCOLTETRAETHYLENE GLYCOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303