7ND9: EM structure of SARS-CoV-2 Spike glycoprotein (one RBD up) in complex with COVOX-253H55L Fab

PDB ID: 7ND9Download
MMDB ID: 199482
PDB Deposition Date: 2021/1/30
Updated in MMDB: 2024/10
Experimental Method:
electron microscopy
Resolution: 2.8  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 7ND9: pentameric; determined by author and by software (PISA)
Molecular Components in 7ND9
Label Count Molecule
Proteins (5 molecules)
3
Spike Glycoprotein
Molecule annotation
1
Covox-253h55l FAB Heavy Chain
Molecule annotation
1
Covox-253h55l FAB Light Chain
Molecule annotation
Chemicals and Non-standard biopolymers (50 molecules)
1
49
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
alpha-L-fucopyranosealpha-L-fucopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303