7LPD: Cryo-EM structure of full-length TRPV1 with capsaicin at 48 degrees Celsius, in an intermediate state, class 2

PDB ID: 7LPDDownload
MMDB ID: 204965
PDB Deposition Date: 2021/2/11
Updated in MMDB: 2021/07
Experimental Method:
electron microscopy
Resolution: 3.55  Å
Source Organism:
Similar Structures:
Biological Unit for 7LPD: tetrameric; determined by author
Molecular Components in 7LPD
Label Count Molecule
Proteins (4 molecules)
4
Transient Receptor Potential Cation Channel Subfamily V Member 1
(Gene symbol: Trpv1)
Molecule annotation
Chemicals and Non-standard biopolymers (24 molecules)
1
8
1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine
2
12
[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate
3
4
(6E)-N-(4-hydroxy-3-methoxybenzyl)-8-methylnon-6-enamide(6E)-N-(4-hydroxy-3-methoxybenzyl)-8-methylnon-6-enamide
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303