7KC0: Structure of the Saccharomyces cerevisiae replicative polymerase delta in complex with a primer/template and the PCNA clamp

PDB ID: 7KC0Download
MMDB ID: 196032
PDB Deposition Date: 2020/10/4
Updated in MMDB: 2025/05
Experimental Method:
electron microscopy
Resolution: 3.2  Å
Source Organism:
Similar Structures:
Biological Unit for 7KC0: octameric; determined by author
Molecular Components in 7KC0
Label Count Molecule
Proteins (6 molecules)
3
Proliferating Cell Nuclear Antigen
Molecule annotation
1
DNA Polymerase
Molecule annotation
1
Pol31 Isoform 1
Molecule annotation
1
Pol32 Isoform 1
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(p*ap*tp*gp*ap*cp*cp*ap*tp*gp*ap*tp*tp*ap*cp*gp*ap*ap*tp*tp*gp*c)-3')
Molecule annotation
1
DNA (25-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
2
MAGNESIUM IONMAGNESIUM ION
2
1
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
3
1
2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE
4
1
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303