7JVA: SARS-CoV-2 spike in complex with the S2A4 neutralizing antibody Fab fragment (local refinement of the receptor-binding domain and Fab variable domains)

PDB ID: 7JVADownload
MMDB ID: 194279
PDB Deposition Date: 2020/8/20
Updated in MMDB: 2024/10
Experimental Method:
electron microscopy
Resolution: 3.6  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 7JVA: trimeric; determined by author
Molecular Components in 7JVA
Label Count Molecule
Proteins (3 molecules)
1
S2a4 FAB Heavy Chain
Molecule annotation
1
S2a4 FAB Light Chain
Molecule annotation
1
Spike Glycoprotein
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
2
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
beta-D-mannopyranosebeta-D-mannopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303