7JKD: Self-assembly of a 3D DNA crystal lattice (4x6 scramble duplex version) containing the J1 immobile Holliday junction

PDB ID: 7JKDDownload
MMDB ID: 204468
PDB Deposition Date: 2020/7/28
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 3.058  Å
Source Organism:
Biological Unit for 7JKD: tetrameric; determined by author and by software (PISA)
Molecular Components in 7JKD
Label Count Molecule
Nucleotides(4 molecules)
1
DNA (5'-d(*gp*ap*ap*cp*gp*ap*cp*ap*cp*tp*gp*ap*cp*gp*gp*ap*gp*ap*cp*tp*c)-3')
Molecule annotation
1
DNA (5'-d(p*cp*cp*gp*tp*cp*a)-3')
Molecule annotation
1
DNA (5'-d(*tp*cp*gp*ap*gp*tp*cp*t)-3')
Molecule annotation
1
DNA (5'-d(p*gp*tp*gp*tp*cp*gp*t)-3')
Molecule annotation
Chemical and Non-standard biopolymers (1 molecule)
1
1
CACODYLATE IONCACODYLATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303