7G6D: Crystal Structure of rat Autotaxin in complex with 10-[[3-(trifluoromethoxy)phenyl]methyl]-1,3,4,5-tetrahydroazepino[3,4-b]indole-2-carboxamide, i.e. SMILES N1(c2c(cccc2)C2=C1CN(CCC2)C(=O)N)Cc1cccc(c1)OC(F)(F)F with IC50=0.35326 microM

PDB ID: 7G6DDownload
MMDB ID: 256786
PDB Deposition Date: 2023/6/5
Updated in MMDB: 2024/12
Experimental Method:
x-ray diffraction
Resolution: 1.73  Å
Source Organism:
Similar Structures:
Biological Unit for 7G6D: monomeric; determined by author and by software (PISA)
Molecular Components in 7G6D
Label Count Molecule
Protein (1 molecule)
1
Isoform 2 of Ectonucleotide Pyrophosphatase/phosphodiesterase Family Member 2
(Gene symbol: Enpp2)
Molecule annotation
Chemicals and Non-standard biopolymers (16 molecules)
1
2
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
beta-D-mannopyranosebeta-D-mannopyranose
3
5
alpha-D-mannopyranosealpha-D-mannopyranose
4
1
10-{[3-(trifluoromethoxy)phenyl]methyl}-3,4,5,10-tetrahydroazepino[3,4-b]indole-2(1H)-carboxamide10-{[3-(trifluoromethoxy)phenyl]methyl}-3,4,5,10-tetrahydroazepino[3,4-b]indole-2(1H)-carboxamide
5
1
ACETATE IONACETATE ION
6
2
CALCIUM IONCALCIUM ION
7
1
POTASSIUM IONPOTASSIUM ION
8
1
CHLORIDE IONCHLORIDE ION
9
1
ZINC IONZINC ION
10
1
SODIUM IONSODIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303