7G66: Crystal Structure of rat Autotaxin in complex with 2-[6-chloro-3-[4-(3-methylpyridin-2-yl)piperazine-1-carbonyl]indol-1-yl]-N,N-dimethylacetamide, i.e. SMILES N1(C(=O)C2=CN(c3cc(ccc23)Cl)CC(=O)N(C)C)CCN(c2ncccc2C)CC1 with IC50=8.37688 microM

PDB ID: 7G66Download
MMDB ID: 256779
PDB Deposition Date: 2023/6/5
Updated in MMDB: 2024/12
Experimental Method:
x-ray diffraction
Resolution: 1.9  Å
Source Organism:
Similar Structures:
Biological Unit for 7G66: monomeric; determined by author and by software (PISA)
Molecular Components in 7G66
Label Count Molecule
Protein (1 molecule)
1
Isoform 2 of Ectonucleotide Pyrophosphatase/phosphodiesterase Family Member 2
(Gene symbol: Enpp2)
Molecule annotation
Chemicals and Non-standard biopolymers (16 molecules)
1
2
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
beta-D-mannopyranosebeta-D-mannopyranose
3
5
alpha-D-mannopyranosealpha-D-mannopyranose
4
2
SULFATE IONSULFATE ION
5
1
2-{6-chloro-3-[4-(3-methylpyridin-2-yl)piperazine-1-carbonyl]-1H-indol-1-yl}-N,N-dimethylacetamide2-{6-chloro-3-[4-(3-methylpyridin-2-yl)piperazine-1-carbonyl]-1H-indol-1-yl}-N,N-dimethylacetamide
6
1
ACETATE IONACETATE ION
7
1
ZINC IONZINC ION
8
2
SODIUM IONSODIUM ION
9
1
CALCIUM IONCALCIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303