7DE2: iron and alpha-ketoglutarate-dependent endoperoxidase NvfI

PDB ID: 7DE2Download
MMDB ID: 204386
PDB Deposition Date: 2020/11/1
Updated in MMDB: 2021/07
Experimental Method:
x-ray diffraction
Resolution: 1.9  Å
Source Organism:
Similar Structures:
Biological Unit for 7DE2: monomeric; determined by author and by software (PISA)
Molecular Components in 7DE2
Label Count Molecule
Protein (1 molecule)
1
Nvfi
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
1
2-OXOGLUTARIC ACID2-OXOGLUTARIC ACID
2
1
methyl (3'~{a}~{R},4'~{S},5'~{S},5~{a}~{S},6~{S},7~{S},9~{a}~{R})-1,1,3'~{a},4',5~{a},7,7'-heptamethyl-3,6'-bis(oxidanylidene)spiro[4,5,7,8,9,9~{a}-hexahydrobenzo[c]oxepine-6,2'-4,5-dihydro-3~{H}-1-benzofuran]-5'-carboxylatemethyl (3'~{a}~{R},4'~{S},5'~{S},5~{a}~{S},6~{S},7~{S},9~{a}~{R})-1,1,3'~{a},4',5~{a},7,7'-heptamethyl-3,6'-bis(oxidanylidene)spiro[4,5,7,8,9,9~{a}-hexahydrobenzo[c]oxepine-6,2'-4,5-dihydro-3~{H}-1-benzofuran]-5'-carboxylate
3
1
FE (III) IONFE (III) ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303