7BEP: Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in a ternary complex with COVOX-384 and S309 Fabs

PDB ID: 7BEPDownload
MMDB ID: 199360
PDB Deposition Date: 2020/12/24
Updated in MMDB: 2021/04
Experimental Method:
x-ray diffraction
Resolution: 2.61  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 7BEP: pentameric; determined by author
Molecular Components in 7BEP
Label Count Molecule
Proteins (5 molecules)
1
Spike Glycoprotein
Molecule annotation
1
Covox-384 Heavy Chain
Molecule annotation
1
Covox-384 Light Chain
Molecule annotation
1
S309 Heavy Chain
Molecule annotation
1
S309 Light Chain
Molecule annotation
Chemicals and Non-standard biopolymers (20 molecules)
1
2
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
alpha-D-mannopyranosealpha-D-mannopyranose
3
1
alpha-L-fucopyranosealpha-L-fucopyranose
4
3
IMIDAZOLEIMIDAZOLE
5
5
CHLORIDE IONCHLORIDE ION
6
1
GLUTAMIC ACIDGLUTAMIC ACID
7
3
GLYCINEGLYCINE
8
1
TRIETHYLENE GLYCOLTRIETHYLENE GLYCOL
9
1
GLYCEROLGLYCEROL
10
1
TETRAETHYLENE GLYCOLTETRAETHYLENE GLYCOL
11
1
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303