7BEN: Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in a ternary complex with COVOX-253 and COVOX-75 Fabs

PDB ID: 7BENDownload
MMDB ID: 199358
PDB Deposition Date: 2020/12/24
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 2.5  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 7BEN: pentameric; determined by author
Molecular Components in 7BEN
Label Count Molecule
Proteins (5 molecules)
1
Spike Glycoprotein
Molecule annotation
1
Covox-253 Heavy Chain
Molecule annotation
1
Covox-253 Light Chain
Molecule annotation
1
Covox-75 Heavy Chain
Molecule annotation
1
Covox-75 Light Chain
Molecule annotation
Chemicals and Non-standard biopolymers (16 molecules)
1
2
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
alpha-L-fucopyranosealpha-L-fucopyranose
3
2
IMIDAZOLEIMIDAZOLE
4
4
GLYCEROLGLYCEROL
5
6
BROMIDE IONBROMIDE ION
6
1
1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303