7BEM: Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-269 scFv

PDB ID: 7BEMDownload
MMDB ID: 199357
PDB Deposition Date: 2020/12/24
Updated in MMDB: 2021/04
Experimental Method:
x-ray diffraction
Resolution: 2.52  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 7BEM: trimeric; determined by author and by software (PISA)
Molecular Components in 7BEM
Label Count Molecule
Proteins (3 molecules)
1
Covox-269 VH Domain
Molecule annotation
1
Covox-269 VL Domain
Molecule annotation
1
Spike Glycoprotein
Molecule annotation
Chemicals and Non-standard biopolymers (13 molecules)
1
2
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
alpha-L-fucopyranosealpha-L-fucopyranose
3
2
GLYCEROLGLYCEROL
4
2
CHLORIDE IONCHLORIDE ION
5
2
PHOSPHATE IONPHOSPHATE ION
6
4
PROLINEPROLINE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303