7BEK: Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-158 Fab (crystal form 2)

PDB ID: 7BEKDownload
MMDB ID: 199355
PDB Deposition Date: 2020/12/23
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 2.04  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 7BEK: trimeric; determined by author and by software (PISA)
Molecular Components in 7BEK
Label Count Molecule
Proteins (3 molecules)
1
Covox-158 Heavy Chain
Molecule annotation
1
Covox-158 Light Chain
Molecule annotation
1
Spike Glycoprotein
Molecule annotation
Chemicals and Non-standard biopolymers (18 molecules)
1
2
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
alpha-L-fucopyranosealpha-L-fucopyranose
3
3
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
4
3
GLYCEROLGLYCEROL
5
2
SULFATE IONSULFATE ION
6
6
CHLORIDE IONCHLORIDE ION
7
1
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303