7A17: Crystal structure of the 5-phosphatase domain of Synaptojanin1 bound to its substrate diC8-PI(3,4,5)P3 in complex with a nanobody

PDB ID: 7A17Download
MMDB ID: 197007
PDB Deposition Date: 2020/8/12
Updated in MMDB: 2024/02
Experimental Method:
x-ray diffraction
Resolution: 2.73  Å
Source Organism:
Lama glama▼
Similar Structures:
Biological Unit for 7A17: dimeric; determined by author
Molecular Components in 7A17
Label Count Molecule
Proteins (2 molecules)
1
Isoform 2 of Synaptojanin-1
Molecule annotation
1
Nanobody 13015
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
1
(2R)-3-{[(R)-{[(1S,2S,3R,4S,5S,6S)-2,6-dihydroxy-3,4,5-tris(phosphonooxy)cyclohexyl]oxy}(hydroxy)phosphoryl]oxy}propane -1,2-diyl dioctanoate(2R)-3-{[(R)-{[(1S,2S,3R,4S,5S,6S)-2,6-dihydroxy-3,4,5-tris(phosphonooxy)cyclohexyl]oxy}(hydroxy)phosphoryl]oxy}propane -1,2-diyl dioctanoate
2
1
MAGNESIUM IONMAGNESIUM ION
3
2
GLYCEROLGLYCEROL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303