6ZZY: Structure of high-light grown Chlorella ohadii photosystem I

PDB ID: 6ZZYDownload
MMDB ID: 204868
PDB Deposition Date: 2020/8/5
Updated in MMDB: 2021/10
Experimental Method:
electron microscopy
Resolution: 3.16  Å
Source Organism:
Similar Structures:
Biological Unit for 6ZZY: 23-meric; determined by author
Molecular Components in 6ZZY
Label Count Molecule
Proteins (23 molecules)
1
Photosystem I P700 Chlorophyll a Apoprotein A1
Molecule annotation
1
Photosystem I P700 Chlorophyll a Apoprotein A2
Molecule annotation
1
Photosystem I Iron-sulfur Center
Molecule annotation
1
Photosystem I Reaction Center Subunit Chloroplastic
Molecule annotation
1
Photosystem I Reaction Center Subunit IV
Molecule annotation
1
Psi-f
Molecule annotation
1
Photosystem I Reaction Center Subunit Chloroplastic
Molecule annotation
1
Photosystem I Reaction Center Subunit IX
Molecule annotation
1
Psi-k
Molecule annotation
1
Photosystem I Reaction Center Subunit XII
Molecule annotation
1
Photosystem I Reaction Center Subunit Viii
Molecule annotation
1
Photosystem I Reaction Center Subunit Vi-chloroplastic-like
Molecule annotation
1
PSI Subunit V
Molecule annotation
2
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
1
Glutathione Reductase
Molecule annotation
1
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
1
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
1
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
1
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
1
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
1
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
1
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
Chemicals and Non-standard biopolymers (379 molecules)
1
1
CHLOROPHYLL A ISOMERCHLOROPHYLL A ISOMER
2
227
CHLOROPHYLL ACHLOROPHYLL A
3
2
PHYLLOQUINONEPHYLLOQUINONE
4
3
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
5
32
BETA-CAROTENEBETA-CAROTENE
6
24
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
7
3
DIGALACTOSYL DIACYL GLYCEROL (DGDG)DIGALACTOSYL DIACYL GLYCEROL (DGDG)
8
1
1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
9
4
DODECYL-BETA-D-MALTOSIDEDODECYL-BETA-D-MALTOSIDE
10
2
1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
11
6
PHOSPHATIDYLETHANOLAMINEPHOSPHATIDYLETHANOLAMINE
12
3
[2-((1-OXODODECANOXY-(2-HYDROXY-3-PROPANYL))-PHOSPHONATE-OXY)-ETHYL]-TRIMETHYLAMMONIUM[2-((1-OXODODECANOXY-(2-HYDROXY-3-PROPANYL))-PHOSPHONATE-OXY)-ETHYL]-TRIMETHYLAMMONIUM
13
3
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
14
1
ERGOSTEROLERGOSTEROL
15
1
(3R)-beta,beta-caroten-3-ol(3R)-beta,beta-caroten-3-ol
16
2
(2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate(2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate
17
1
beta,beta-caroten-4-onebeta,beta-caroten-4-one
18
22
(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
19
24
CHLOROPHYLL BCHLOROPHYLL B
20
2
OLEIC ACIDOLEIC ACID
21
2
(3~{E},5~{E},7~{E})-6-methyl-8-[(6~{R})-2,2,6-trimethylcyclohexyl]octa-3,5,7-trien-2-one(3~{E},5~{E},7~{E})-6-methyl-8-[(6~{R})-2,2,6-trimethylcyclohexyl]octa-3,5,7-trien-2-one
22
1
2-(2-azanylethanoylamino)ethanoic acid2-(2-azanylethanoylamino)ethanoic acid
23
2
PALMITIC ACIDPALMITIC ACID
24
2
DIACYL GLYCEROLDIACYL GLYCEROL
25
1
SPHINGOSINESPHINGOSINE
26
1
(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
27
1
(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol
28
3
TripalmitoylglycerolTripalmitoylglycerol
29
1
O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serineO-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine
30
1
(2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid(2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303