6ZZX: Structure of low-light grown Chlorella ohadii Photosystem I

PDB ID: 6ZZXDownload
MMDB ID: 204867
PDB Deposition Date: 2020/8/5
Updated in MMDB: 2024/10
Experimental Method:
electron microscopy
Resolution: 2.7  Å
Source Organism:
Similar Structures:
Biological Unit for 6ZZX: 24-meric; determined by author
Molecular Components in 6ZZX
Label Count Molecule
Proteins (24 molecules)
1
Photosystem I P700 Chlorophyll a Apoprotein A1
Molecule annotation
1
Photosystem I P700 Chlorophyll a Apoprotein A2
Molecule annotation
1
Photosystem I Iron-sulfur Center
Molecule annotation
1
Photosystem I Reaction Center Subunit Chloroplastic
Molecule annotation
1
Photosystem I Reaction Center Subunit IV
Molecule annotation
1
Psi-f
Molecule annotation
1
Photosystem I Reaction Center Subunit Chloroplastic
Molecule annotation
1
Photosystem I Reaction Center Subunit Vi-chloroplastic-like
Molecule annotation
1
Photosystem I Reaction Center Subunit IX
Molecule annotation
1
Photosystem I Reaction Center Subunit Chloroplastic
Molecule annotation
1
Photosystem I Reaction Center Subunit XI
Molecule annotation
1
Photosystem I Reaction Center Subunit XII
Molecule annotation
1
Photosystem I Reaction Center Subunit Viii
Molecule annotation
1
Photosystem I Subunit O
Molecule annotation
2
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
1
Glutathione Reductase
Molecule annotation
1
Lhca4
Molecule annotation
1
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
1
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
1
Lhca7
Molecule annotation
1
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
1
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
1
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
Chemicals and Non-standard biopolymers (403 molecules)
1
1
CHLOROPHYLL A ISOMERCHLOROPHYLL A ISOMER
2
208
CHLOROPHYLL ACHLOROPHYLL A
3
47
CHLOROPHYLL BCHLOROPHYLL B
4
2
PHYLLOQUINONEPHYLLOQUINONE
5
3
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
6
32
BETA-CAROTENEBETA-CAROTENE
7
24
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
8
1
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
9
5
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
10
11
PHOSPHATIDYLETHANOLAMINEPHOSPHATIDYLETHANOLAMINE
11
1
1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
12
4
DODECYL-BETA-D-MALTOSIDEDODECYL-BETA-D-MALTOSIDE
13
4
DIGALACTOSYL DIACYL GLYCEROL (DGDG)DIGALACTOSYL DIACYL GLYCEROL (DGDG)
14
4
1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
15
1
(2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate(2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate
16
1
(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL
17
2
(3R)-beta,beta-caroten-3-ol(3R)-beta,beta-caroten-3-ol
18
4
SPHINGOSINESPHINGOSINE
19
1
beta,beta-caroten-4-onebeta,beta-caroten-4-one
20
21
(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
21
2
ASTAXANTHINASTAXANTHIN
22
4
OLEIC ACIDOLEIC ACID
23
1
(3~{E},5~{E},7~{E})-6-methyl-8-[(6~{R})-2,2,6-trimethylcyclohexyl]octa-3,5,7-trien-2-one(3~{E},5~{E},7~{E})-6-methyl-8-[(6~{R})-2,2,6-trimethylcyclohexyl]octa-3,5,7-trien-2-one
24
7
PALMITIC ACIDPALMITIC ACID
25
4
DIACYL GLYCEROLDIACYL GLYCEROL
26
1
benzene-1,3,5-triolbenzene-1,3,5-triol
27
4
(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
28
1
TripalmitoylglycerolTripalmitoylglycerol
29
1
O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serineO-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine
30
1
[2-((1-OXODODECANOXY-(2-HYDROXY-3-PROPANYL))-PHOSPHONATE-OXY)-ETHYL]-TRIMETHYLAMMONIUM[2-((1-OXODODECANOXY-(2-HYDROXY-3-PROPANYL))-PHOSPHONATE-OXY)-ETHYL]-TRIMETHYLAMMONIUM
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303