6ZMD: Crystal structure of HYPE covalently tethered to BiP bound to AMP-PNP

PDB ID: 6ZMDDownload
MMDB ID: 200905
PDB Deposition Date: 2020/7/2
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 2.64  Å
Source Organism:
Similar Structures:
Biological Unit for 6ZMD: dimeric; determined by author and by software (PISA)
Molecular Components in 6ZMD
Label Count Molecule
Proteins (2 molecules)
1
Endoplasmic Reticulum Chaperone BIP
(Gene symbol: HSPA5)
Molecule annotation
1
Protein Adenylyltransferase Ficd
(Gene symbol: FICD)
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
1
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTERPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
1
~{N}-[2-[1-[(2~{R},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-[[tris(oxidanyl)-$l^{5}-phosphanyl]oxymethyl]oxolan-2-yl]-1,2,3-triazol-4-yl]ethyl]ethanamide~{N}-[2-[1-[(2~{R},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-[[tris(oxidanyl)-$l^{5}-phosphanyl]oxymethyl]oxolan-2-yl]-1,2,3-triazol-4-yl]ethyl]ethanamide
3
2
MAGNESIUM IONMAGNESIUM ION
4
2
PHOSPHATE IONPHOSPHATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303