6ZKQ: Native complex I, open2

PDB ID: 6ZKQDownload
MMDB ID: 193742
PDB Deposition Date: 2020/6/30
Updated in MMDB: 2022/11
Experimental Method:
electron microscopy
Resolution: 3.3  Å
Source Organism:
Similar Structures:
Biological Unit for 6ZKQ: 45-meric; determined by author
Molecular Components in 6ZKQ
Label Count Molecule
Proteins (45 molecules)
1
Nadh Dehydrogenase [ubiquinone] Flavoprotein 1, Mitochondrial
Molecule annotation
1
Mitochondrial Complex I, 24 KDA Subunit
Molecule annotation
1
Nadh:ubiquinone Oxidoreductase Core Subunit S1
Molecule annotation
1
Mitochondrial Complex I, 49 KDA Subunit
Molecule annotation
1
Nadh:ubiquinone Oxidoreductase Core Subunit S3
Molecule annotation
1
Mitochondrial Complex I, Psst Subunit
Molecule annotation
1
Mitochondrial Complex I, Tyky Subunit
Molecule annotation
1
Nadh-ubiquinone Oxidoreductase Chain 3
(Gene symbol: ND3)
Molecule annotation
1
Nadh-ubiquinone Oxidoreductase Chain 1
(Gene symbol: ND1)
Molecule annotation
1
Nadh-ubiquinone Oxidoreductase Chain 6
(Gene symbol: ND6)
Molecule annotation
1
Nadh-ubiquinone Oxidoreductase Chain 4L
(Gene symbol: ND4L)
Molecule annotation
1
Nadh-ubiquinone Oxidoreductase Chain 5
(Gene symbol: ND5)
Molecule annotation
1
Nadh-ubiquinone Oxidoreductase Chain 4
(Gene symbol: ND4)
Molecule annotation
1
Nadh-ubiquinone Oxidoreductase Chain 2
(Gene symbol: ND2)
Molecule annotation
1
Mitochondrial Complex I, B14.7 Subunit
Molecule annotation
1
Nadh:ubiquinone Oxidoreductase Subunit B5
Molecule annotation
2
Acyl Carrier Protein
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 8
Molecule annotation
1
Mitochondrial Complex I, Pdsw Subunit
Molecule annotation
1
Mitochondrial Complex I, 10 KDA Subunit
Molecule annotation
1
Mitochondrial Complex I, 13 KDA Subunit
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] Iron-sulfur Protein 4, Mitochondrial
Molecule annotation
1
Nadh:ubiquinone Oxidoreductase Subunit A9
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 2
Molecule annotation
1
Mitochondrial Complex I, B13 Subunit
Molecule annotation
1
Nadh:ubiquinone Oxidoreductase Subunit A6
Molecule annotation
1
Mitochondrial Complex I, B14.5a Subunit
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 12
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 10, Mitochondrial
Molecule annotation
1
Nadh:ubiquinone Oxidoreductase Subunit S5
Molecule annotation
1
Nadh:ubiquinone Oxidoreductase Subunit A3
Molecule annotation
1
Nadh:ubiquinone Oxidoreductase Subunit B3
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Subunit C2
Molecule annotation
1
Nadh:ubiquinone Oxidoreductase Subunit B4
Molecule annotation
1
Mitochondrial Complex I, B16.6 Subunit
Molecule annotation
1
Mitochondrial Complex I, B17 Subunit
Molecule annotation
1
Nadh:ubiquinone Oxidoreductase Subunit B7
Molecule annotation
1
Nadh:ubiquinone Oxidoreductase Subunit B9
Molecule annotation
1
Nadh:ubiquinone Oxidoreductase Subunit B2
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Beta Subcomplex Subunit 8, Mitochondrial
Molecule annotation
1
Mitochondrial Complex I, Esss Subunit
Molecule annotation
1
Mitochondrial Complex I, Kfyi Subunit
Molecule annotation
1
Mitochondrial Complex I, Mnll Subunit
Molecule annotation
1
Mitochondrial Complex I, Mwfe Subunit
Molecule annotation
Chemicals and Non-standard biopolymers (44 molecules)
1
6
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
2
1
FLAVIN MONONUCLEOTIDEFLAVIN MONONUCLEOTIDE
3
2
FE2/S2 (INORGANIC) CLUSTERFE2/S2 (INORGANIC) CLUSTER
4
1
POTASSIUM IONPOTASSIUM ION
5
14
1,2-Distearoyl-sn-glycerophosphoethanolamine1,2-Distearoyl-sn-glycerophosphoethanolamine
6
6
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
7
8
CARDIOLIPINCARDIOLIPIN
8
2
S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioateS-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate
9
1
ZINC IONZINC ION
10
1
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATENADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
11
1
ADENOSINE MONOPHOSPHATEADENOSINE MONOPHOSPHATE
12
1
MYRISTIC ACIDMYRISTIC ACID
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303