6ZCZ: Crystal structure of receptor binding domain of SARS-CoV-2 Spike glycoprotein in ternary complex with EY6A Fab and a nanobody

PDB ID: 6ZCZDownload
MMDB ID: 189342
PDB Deposition Date: 2020/6/12
Updated in MMDB: 2021/12
Experimental Method:
x-ray diffraction
Resolution: 2.65  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 6ZCZ: tetrameric; determined by author and by software (PISA)
Molecular Components in 6ZCZ
Label Count Molecule
Proteins (4 molecules)
1
Spike Protein S1
Molecule annotation
1
Nanobody
Molecule annotation
1
Ey6a Heavy Chain
Molecule annotation
1
Ey6a Light Chain
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
1
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
5
CHLORIDE IONCHLORIDE ION
3
1
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303