6Z8W: X-ray structure of the complex between human alpha thrombin and a thrombin binding aptamer variant (TBA-3G), which contains 1-beta-D-glucopyranosyl residue in the side chain of Thy3 at N3

PDB ID: 6Z8WDownload
MMDB ID: 197982
PDB Deposition Date: 2020/6/2
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 1.73  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 6Z8W: trimeric; determined by author and by software (PISA)
Molecular Components in 6Z8W
Label Count Molecule
Proteins (2 molecules)
1
Prothrombin
Molecule annotation
1
Prothrombin
Molecule annotation
Nucleotide(1 molecule)
1
Tba-3g
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
1
D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamideD-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide
2
1
SODIUM IONSODIUM ION
3
1
POTASSIUM IONPOTASSIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303