6Z8M: Structure of [NiFeSe] hydrogenase G491S variant from Desulfovibrio vulgaris Hildenborough pressurized with Oxygen gas - structure G491S-O2

PDB ID: 6Z8MDownload
MMDB ID: 192212
PDB Deposition Date: 2020/6/2
Updated in MMDB: 2025/12
Experimental Method:
x-ray diffraction
Resolution: 1.02  Å
Source Organism:
Similar Structures:
Biological Unit for 6Z8M: dimeric; determined by author and by software (PISA)
Molecular Components in 6Z8M
Label Count Molecule
Proteins (2 molecules)
1
Periplasmic [nifese] Hydrogenase, Small Subunit
(Gene symbol: hysB)
Molecule annotation
1
Periplasmic [nifese] Hydrogenase, Large Subunit, Selenocysteine-containing
(Gene symbol: hysA)
Molecule annotation
Chemicals and Non-standard biopolymers (14 molecules)
1
3
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
2
1
oxygen-damaged SF4oxygen-damaged SF4
3
3
GLYCEROLGLYCEROL
4
1
CARBONMONOXIDE-(DICYANO) IRONCARBONMONOXIDE-(DICYANO) IRON
5
1
NICKEL (II) IONNICKEL (II) ION
6
1
FE (II) IONFE (II) ION
7
1
HYDROSULFURIC ACIDHYDROSULFURIC ACID
8
1
CHLORIDE IONCHLORIDE ION
9
2
OXYGEN MOLECULEOXYGEN MOLECULE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303