6Z2P: Crystal structure of catalytic inactive OgpA from Akkermansia muciniphila in complex with an O-glycopeptide (glycodrosocin) substrate

PDB ID: 6Z2PDownload
MMDB ID: 193492
PDB Deposition Date: 2020/5/18
Updated in MMDB: 2021/11
Experimental Method:
x-ray diffraction
Resolution: 2.16  Å
Source Organism:
Akkermansia muciniphila ATCC BAA-835▼
Similar Structures:
Biological Unit for 6Z2P: dimeric; determined by author and by software (PISA)
Molecular Components in 6Z2P
Label Count Molecule
Proteins (2 molecules)
1
O-glycan Protease
Molecule annotation
1
Glycodrosocin
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
1
2-acetamido-2-deoxy-alpha-D-galactopyranose2-acetamido-2-deoxy-alpha-D-galactopyranose
2
1
beta-D-galactopyranosebeta-D-galactopyranose
3
1
CALCIUM IONCALCIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303