6YXY: State B of the Trypanosoma brucei mitoribosomal large subunit assembly intermediate

PDB ID: 6YXYDownload
MMDB ID: 199745
PDB Deposition Date: 2020/5/4
Updated in MMDB: 2021/03
Experimental Method:
electron microscopy
Resolution: 3.1  Å
Source Organism:
Similar Structures:
Biological Unit for 6YXY: 83-meric; determined by author
Molecular Components in 6YXY
Label Count Molecule
Proteins (82 molecules)
1
Bl28m
Molecule annotation
1
Ul29m
Molecule annotation
1
Ul30m
Molecule annotation
1
Bl32m
Molecule annotation
1
Bl35m
Molecule annotation
1
Ml67
Molecule annotation
1
Mt-enga
Molecule annotation
1
Ml68
Molecule annotation
1
Mt-laf2
Molecule annotation
1
Mt-laf3
Molecule annotation
1
Ml70
Molecule annotation
1
Mt-laf4
Molecule annotation
1
Ul3m
Molecule annotation
1
Ml71
Molecule annotation
1
Mt-laf5
Molecule annotation
1
UNK
Molecule annotation
1
Ul4m
Molecule annotation
1
Ml72
Molecule annotation
1
Mt-laf6
Molecule annotation
1
Mt-laf7
Molecule annotation
1
Ml74
Molecule annotation
1
Mt-laf8
Molecule annotation
1
Bl9m
Molecule annotation
1
Ml75
Molecule annotation
1
Malsu1
Molecule annotation
1
UNK
Molecule annotation
1
Ml76
Molecule annotation
1
L0r8f8
Molecule annotation
1
Ul11m
Molecule annotation
1
Ml77
Molecule annotation
2
Mt-acp
Molecule annotation
1
UNK
Molecule annotation
1
Ml78
Molecule annotation
1
Mt-laf12
Molecule annotation
1
UNK
Molecule annotation
1
Mtg1
Molecule annotation
1
UNK
Molecule annotation
1
Ul13m
Molecule annotation
1
Ml80
Molecule annotation
1
Mt-laf14
Molecule annotation
1
Ul14m
Molecule annotation
1
Ml81
Molecule annotation
2
Mt-laf15a
Molecule annotation
1
Ul15m
Molecule annotation
1
Ml83
Molecule annotation
1
Mt-engb
Molecule annotation
1
Bl17m
Molecule annotation
1
Ml84
Molecule annotation
1
Ml85
Molecule annotation
1
Mt-laf18
Molecule annotation
1
Bl19m
Molecule annotation
1
Ml86
Molecule annotation
1
Mt-laf19
Molecule annotation
1
Bl20m
Molecule annotation
1
Ml87
Molecule annotation
1
Mt-laf20
Molecule annotation
1
Bl21m
Molecule annotation
1
Ml88
Molecule annotation
1
Ul22m
Molecule annotation
1
Ml89
Molecule annotation
1
Ul23m
Molecule annotation
1
Ml90
Molecule annotation
1
UNK
Molecule annotation
1
Ul24m
Molecule annotation
1
Ml92
Molecule annotation
1
Ml93
Molecule annotation
1
Ml94
Molecule annotation
1
Ml95
Molecule annotation
1
Ml41
Molecule annotation
1
Ml42
Molecule annotation
1
Ml98
Molecule annotation
1
Ml43
Molecule annotation
1
Ml99
Molecule annotation
1
Ml100
Molecule annotation
1
Ml101
Molecule annotation
1
Ml49
Molecule annotation
1
Ml52
Molecule annotation
1
Ml53
Molecule annotation
1
Ml63
Molecule annotation
1
Ml64
Molecule annotation
Nucleotide(1 molecule)
1
12S Ribosomal RNA
Molecule annotation
Chemicals and Non-standard biopolymers (48 molecules)
1
5
ZINC IONZINC ION
2
33
MAGNESIUM IONMAGNESIUM ION
3
1
SPERMIDINESPERMIDINE
4
3
GUANOSINE-5'-TRIPHOSPHATEGUANOSINE-5'-TRIPHOSPHATE
5
2
SODIUM IONSODIUM ION
6
1
ADENOSINE-5'-TRIPHOSPHATEADENOSINE-5'-TRIPHOSPHATE
7
2
S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATES-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATE
8
1
NICOTINAMIDE-ADENINE-DINUCLEOTIDENICOTINAMIDE-ADENINE-DINUCLEOTIDE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303